The genome of C. bovis

Data files associated with <em>C. bovis </em>genome publication. Below is a description of each file: <br> <br> <strong>caenorhabditis_35species_1167orthos.supermatrix.fa</strong>: supermatrix consisting of the concatenated alignments of 1,167 single-copy orthologues which was used to infer the species tree. <strong>caenorhabditis_35species_1167orthos.treefile</strong>: <em>Caenorhabditis </em>species tree in newick format from IQ-TREE <strong>CBOVI.caenorhabditis_bovis_LS_v1.annotations.gff3</strong>: GFF3 (annotation) file for the <em>C. bovis </em>reference genome from BRAKER <strong>CBOVI.caenorhabditis_bovis_LS_v1.cds.fna</strong>: predicted coding sequences (CDS) for the <em>C. bovis </em>reference genome from BRAKER <strong>CBOVI.caenorhabditis_bovis_LS_v1.proteins.faa</strong>: predicted protein/amino acid sequences for the <em>C. bovis </em>reference genome from BRAKER <strong>CBOVI.caenorhabditis_bovis_LS_v1.scaffolds.fna</strong>: genome fasta for the <em>C. bovis </em>reference genome (Note: contains contigs, file named scaffold.fna to match filenames of other <em>Caenorhabditis</em> species) <strong>Orthogroups.txt</strong>: orthology clustering file of protein sequences from <em>C. bovis, </em>32 other <em>Caenorhabditis </em>species and two <em>Diploscapter </em>outgroup taxa from OrthoFinder