Base accuracy of MuSICA 2 assembly.

A: The total number of base pairs in the reference full-length cDNA clones. Note that non-reference clones are excluded; B: the total number of base pairs in the output contigs; C: the number of base pairs matched to the reference full-length cDNA clones in the alignments (B); D: the number of base pairs mismatched to the reference full-length cDNA clones in the alignments (B); E: the number of base pairs inserted (e.g., a reconstructed contig is longer than the reference clone) in the alignments (B); F: the number of base pairs deleted in the alignments (B).