Additional file 2: of A practical approach to detect ancestral haplotypes in livestock populations

Five most common ancestral haplotypes per breed/population in Fleckvieh, Simmental and Brown-Swiss. Information presented for each haplotype (Hap) pertain to chromosome (Chr), genomic coordinates of the haplotype (starting SNP and ending SNP base pair positions), frequency (as provided by AlphaPhase), relative frequency to other haplotypes (frequency of the haplotype divided by the sum of the frequencies of all haplotypes detected in the cluster for the total population), genes of interest (closer than 0.3Â Mb of the haplotype) and closest gene with its coordinates. Coordinates are given according to the Genome assembly UMD3.1. (XLSX 14Â kb)