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ISS data in "A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart"

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Figshare2019-10-28 更新2026-04-29 收录
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https://figshare.com/articles/dataset/ISS_data_in_A_spatiotemporal_organ-wide_gene_expression_and_cell_atlas_of_the_developing_human_heart_/10058048
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This data set contains in situ sequencing (ISS) data for the paper A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart by Michaela Asp, Stefania Giacomello, Ludvig Larsson, Chenglin Wu, Daniel Fürth, Xiaoyan Qian, Eva Wärdell, Joaquin Custodio, Johan Reimegård, Fredrik Salmén, Cecilia Österholm, Patrik L. Ståhl, Erik Sundström, Elisabet Åkesson, Olaf Bergmann, Magda Bienko, Agneta Månsson-Broberg, Mats Nilsson, Christer Sylvén, Joakim LundebergRaw images for the default data shown in the viewer https://moldia.github.io/heart/ are provided, together with cell calling results. Data from other sections are provided as decoded spots. Images are named according to base#_channel#_ORG.tifImaging channels are: c1-DAPI c3-T c4-G c5-C c6-A c2 stains all blobs at once to assist image registration, but not essential for image analysis. Not provided here due to data set size limit.Genes and barcodes can be found in "taglist" file
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2019-10-28
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