Table 1 in Understanding the color variability and resolving taxonomic confusion in the sea cucumber Isostichopus badionotus (Echinodermata, Holothuroidea): a revision of the genus Isostichopus

Table 1 (continued on next six pages). Specimens of Isostichopus Deichmann, 1958 analyzed for the partial regions of cytochrome oxidase subunit 1 (COI-Fr1-Barcoding region, COI-Fr2) and 16S genes. Catalog number column includes voucher specimens or tissues from where the sequences were obtained. Field numbers used in phylogenetic trees correspond to the initial letter of the locality, the code and the color patterns in Fig. 1. Contractions in locality column: Mexico: Yuc = Yucatán; Belize: TC = Tobacco Cay; CBC = Carrie Bow Cay; Panama: BT = Bocas del Toro; Ga = Galeta; Ta = Taboguilla Island (Pacific); IP = Perlas Islands (Pacific); Colombia: SM = Santa Marta; MSM = Morro de Santa Marta; MPA = Morritos de Punta Aguja; Ne = Bahía Neguanje; LG = La Guajira; BA = Banco de las Ánimas; Prov = Providencia Island; Ch = Choco (Pacific); Ecuador: Gal = Galapagos; U.S. Virgin Islands: SCI = St. Croix; British Virgin Islands: GI = Guana Island; Curaçao: Cu = Curaçao; Cu-CMRS = Curaçao-Carmabi Marine Research Station; Brazil: SC = Santa Catalina; Cape Verde: SV = Sao Vicente Island; SI = Santiago Island; Senegal: DÎM = Dakar-Îles Madeleines; Liberia: K = Kligba, Rivercess County; AB = Artah Beach, Sasstow Grand Kru County; Ascension Island: EB = English Bay; G = Georgetown. Photo ID: figure number in the present paper or the process ID in the BOLD database. GenBank accession numbers in parentheses denote sequences by other authors. Astichopus multifidus (Sluiter, 1910), Stichopus horrens Selenka, 1867, and Apostichopus japonicus (Selenka, 1867) were used as outgroups in the phylogenetic analyses. An asterisk (*) in the species column indicates that the species ID in GenBank was changed from a previous name (shown in parentheses).
SpeciesMuseum Catalog numberField NumberLocalityPhotoGeneBank Acc. No. COI-Fr1GeneBank Acc. No. COI-Fr2GeneBank Acc. No. 16SReferenceI. badionotusTbBT0002BT2-RPanama-BT8C’––MK477775This studyI. badionotusUSNM 1659459BT14-CHPanama-BT8A–MK477909MK477776This studyI. badionotusTbBT0016BT16-CHPanama-BT8B––MK477777This studyI. badionotusUSNM 1659460BT20-RPanama-BT1F–GMK477881–MK477778This studyI. badionotusUSNM 1659461BT45-UPanama-BT8VMK477882MK477910MK477779This studyI. badionotusUSNM 1659462BT48-UPanama-BT8WMK477883MK477911MK477780This studyI. badionotusUSNM 1659463BT55-CHPanama-BT8CMK477884–MK477781This studyI. badionotusUSNM 1659464BT62-CHPanama-BT8DMK477885–MK477782This studyI. badionotusTbBT0067BT67-BYPanama-BT––MK477912MK477783This studyI. badionotusUSNM 1659465BT69-BYPanama-BT–MK477886–MK477784This studyI. badionotusTbBT0071BT71-BYPanama-BT––MK477913MK477785This studyI. badionotusTbBT0073BT73-BYPanama-BT––MK477914MK477786This studyI. badionotusMBMLP BT75BT75-RPanama-BT–MK477887MK477915MK477787This studyI. badionotusTbBT0083BT83-RPanama-BT––MK477916MK477788This studyI. badionotusUSNM 1659466BT98-RPanama-BT8E’MK477888MK477917MK477789This studyI. badionotusMBMLP BT106BT106-CHPanama-BT8EMK477889–MK477790This studyI. badionotusUSNM 1659467BT107-CHPanama-BT8FMK477890–MK477791This studyI. badionotusUSNM 1659454BT111-CHPanama-BT8GMK477891MK477918MK477792This studyI. badionotusUSNM 1659455BT112-UPanama-BT8XMK477892MK477919MK477793This studyI. badionotusUSNM 1659456BT115-CHPanama-BT6HMK477893MK477920MK477794This studyI. badionotusUSNM 1659457BT116-BYPanama-BT8L’MK477894MK477921MK477795This studyI. badionotusUSNM 1659458BT118-CHPanama-BT8IMK477895MK477922MK477796This studyI. badionotusINV TEJ1167SM4-RColombia-SM1H–I––MK477797This studyI. badionotusINV TEJ1168SM5-RColombia-SM8G’––MK477798This studyI. badionotusINV TEJ1170SM7-RColombia-SM8H’–MK477923MK477799This studyI. badionotusINV TEJ1172SM9-RColombia-SM8H’ right–MK477924MK477800This studyI. badionotusINV TEJ1173SM10-RColombia-SM8H’–MK477925MK477801This studyI. badionotus I. badionotusINV TEJ1176 INV TEJ1178SM13-BY SM15-RColombia-SM Colombia-SM1J– –MK477926 –MK477802 MK477803This study This studyI. badionotusINV EQU4572 INV TEJ1987MSM16-UColombia-MSMBECSC73-20OL989848––This studyI. badionotusINV EQU4573 INV TEJ1988MPA17-RColombia-MPABECSC74-20OL989849––This studyI. badionotusINV TEJ1179Ne1-CHColombia-Ne––MK477927MK477804This studyI. badionotusINV TEJ1184Ne6-CHColombia-Ne8J–MK477928MK477805This studyI. badionotusINV TEJ1193Ne15-CHColombia-Ne8K––MK477806This studyI. badionotusINV TEJ1194Ne16-CHColombia-Ne–––MK477807This studyI. badionotusINV TEJ1196Ne18-CHColombia-Ne8L–MK477929MK477808This studyI. badionotusINV TEJ1267GV93-CHColombia-LG8M–MK477930MK477809This studyI. badionotusINV TEJ1268GV100-CHColombia-LG8N–MK477931MK477810This studyI. badionotusINV TEJ1292GV155-UColombia-LG8Y––MK477811This studyI. badionotusINV TEJ1294GV157-RColombia-LG8J’–MK477932MK477812This studyI. badionotusINV TEJ1301GV236-RColombia-LG8K’–MK477933MK477813This studyI. badionotusINV TEJ1306GV250-CHColombia-LG8O–MK477934MK477814This studyI. badionotusINV TEJ1310GV300-CHColombia-LG8P–MK477935MK477815This studyI. badionotusINV TEJ1125Ma10-CHColombia-LG1C–D––MK477817This studyI. badionotusINV EQU3046EQU3046-CHColombia-LG8Q––MK477816This studyI. badionotusINV EQU3089EQU3089-RColombia-SMBECSC49-20––OL989879This studyI. badionotusINV TEJ2052Pr29-RColombia-ProvBECSC71-20OL989773––This studyI. badionotusINV TEJ2056Pr38-RColombia-ProvBECSC72-20OL989774––This studyI. badionotusCu1-BYCuraçao-Cu8M’–MK477940MK477821This studyI. badionotusCu2-UCuraçao-Cu8Z–MK477941MK477822This studyI. badionotusBr1Brazil-SC––MK477936MK477818This studyI. badionotusBr6Brazil-SC––MK477937MK477819This studyI. badionotusBr9Brazil-SC––MK477938–This studyI. badionotusBr15Brazil-SC––MK477939MK477820This studyI. maculatus phoeniusUSNM 1659468BT5-LSDPanama-BT17T––MK477823This studyI. maculatus phoeniusMBMLP IpBT7BT7-DWPanama-BT–MK477896MK477942MK477824This studyI. maculatus phoeniusUSNM 1659473BT21-DWPanama-BT–MK477897–MK477825This studyI. maculatus phoeniusUSNM 1659474BT22-DWPanama-BT17OMK477898MK477943MK477826This studyI. maculatus phoeniusUSNM 1659475BT23-DWPanama-BT17GMK477899–MK477827This studyI. maculatus phoeniusUSNM 1659476BT25-DWPanama-BT17FMK477900MK477944MK477828This studyI. maculatus phoeniusUSNM 1659477BT43-DWPanama-BT1ST/18AMK477901MK477945MK477829This studyI. maculatus phoeniusUSNM 1659478BT44-DWPanama-BT17E/18EMK477902MK477946MK477830This studyI. maculatus phoeniusUSNM 1659479BT53-LSDPanama-BT17A’MK477903MK477947MK477831This studyI. maculatus phoeniusUSNM 1659469BT131-DWPanama-BT17N/18HMK477904MK477948MK477832This studyI. maculatus phoeniusUSNM 1659470BT190-DWPanama-BT18LMK477905MK477949MK477833This studyI. maculatus phoeniusUSNM 1659471BT191-DWPanama-BT17MMK477906–MK477834This studyI. maculatus phoeniusUSNM 1659472BT192-DWPanama-BT17R/18IMK477907MK477950MK477835This studyI. maculatus phoeniusTpGa0008Ga8-UPanama-Ga1K–MK477951MK477836This studyI. maculatus phoeniusTpGa0011Ga11-LBDPanama-Ga17U–MK477952MK477837This studyI. maculatus phoeniusTpGa0209Ga209-LSDPanama-Ga––MK477953MK477838This studyI. maculatus phoeniusUSNM 1659480Ga223-LSDPanama-Ga17S–MK477954MK477839This studyI. maculatus phoeniusUSNM 1659481Ga224-DWPanama-Ga17I–MK477955MK477840This studyI. maculatus phoeniusINV EQU4144 INV TEJ1333BA313-LBDColombia-BA17V–MK477956MK477841This studyI. maculatus phoeniusINV EQU4146 INV TEJ1334BA314-LBDColombia-BA17W–MK477957MK477842This studyI. maculatus phoeniusINV TEJ1336BA319-UColombia-BA1L–MK477958MK477843This studyI. maculatus phoeniusINV TEJ1257GV82-DWColombia-LG17J––MK477844This studyI. maculatus phoeniusINV TEJ1258GV83-DWColombia-LG17K–MK477959MK477845This studyI. maculatus phoeniusINV TEJ1259GV84-DWColombia-LG17P–MK477960MK477846This studyI. maculatus phoeniusINV TEJ1261GV86-DWColombia-LG17L–MK477961MK477847This studyI. maculatus phoeniusINV TEJ1265GV90-LSDColombia-LG17X–MK477962MK477848This studyI. maculatus phoeniusINV TEJ1269GV108-DWColombia-LG17Q–MK477963MK477849This studyI. maculatus phoeniusINV TEJ1272GV117-LSDColombia-LG17Y–MK477964MK477850This studyI. maculatus phoeniusINV TEJ1113GCV1-LBDColombia-LG–––MK477851This studyI. maculatus phoeniusINV TEJ1115GCV3-UColombia-LG17C––MK477852This studyI. maculatus maculatusCV1-DWCape Verde-SVI14A–MK477965MK477853This studyI. maculatus maculatusCV7-LSDCape Verde-SI14G–MK477971MK477859This studyI. maculatus maculatusCV10-LSDCape Verde-SI14E–MK477974MK477862This studyI. maculatus maculatusASI1-LSDAscension Is.-EB––MK477975MK477863This studyI. maculatus maculatusASI2-LSDAscension Is.-EB––MK477976MK477864This studyI. maculatus maculatusASI4-LSDAscension Is.-EB––MK477978MK477866This studyI. maculatus maculatusUSNM E16150E16150-LSDAscension Is.-EB12A–MK477980MK477867This studyI. maculatus maculatusUF 16295UF16295-LSDSenegal-DÎM14LOM056886––Florida Museum, unpubl.I. maculatus maculatusFAOLIB08-LSDLiberia-K14N–OMZ742160–MZ743890González-Wangüemert et al. in prep.I. maculatus maculatusFAOLIB09-LSDLiberia-K14N–OMZ742161–MZ743891González-Wangüemert et al. in prep.I. maculatus maculatusFAOLIB10-LSDLiberia-AB14N–OMZ742162–MZ743892González-Wangüemert et al. in prep.I. fuscusTfTa0210Ta210-RPanama-Ta21AMK477908MK477981MK477869This studyI. fuscusUSNM 1659483Ta211-RPanama-Ta1L’–M’–MK477982MK477870This studyI. fuscusUSNM 1659482IP322-RPanamá-IP21B–MK477983MK477871This studyI. fuscusINV EQU4323EQU4323-RColombia-Ch21D–E–MK477984MK477872This studyI. fuscusINV EQU4324EQU4324-BRColombia-Ch21D–E–MK477985MK477873This studyI. fuscusINV EQU2746EQU2746-RColombia-Ch21C––MK477875This studyI. fuscusINV TEJ1960Ri54C1-RColombia-Ch––MK477986MK477874This studyI. fuscusINV TEJ1923TEJ1923-RColombia- ChBECSC75-20OL989775––This studyI. fuscusINV EQU4229EQU4229Colombia- Ch21M, BECSC52-20––OL989880This studyI. fuscusINV EQU4230EQU4230-BUColombia- ChBECSC53-20––OL989881This studyI. fuscusUF 9112Ga UF 9112Ecuador-GaPP093756Florida Museum, unpubl.I. fuscusUF 9651Ga UF 9651Ecuador-GaPP093755Florida Museum, unpubl.I. fuscusUF 9672Ga UF 9672Ecuador-GaPP093757Florida Museum, unpubl.I. macroparenthesesUSNM E40833E40833U.S. Virgin Islands-SCI24G–MK477987MK477876This studyI. macroparenthesesUSNM E47624E47524British Virgin Islands-GI1Q’/24F–MK477988MK477877This studyI. macroparenthesesUSNM 1659484Be99Belize-TC1P’/24A–B–MK477989MK477878This studyI. macroparenthesesUSNM 1659485Be107Belize-CBC24C–D–MK477990MK477879This studyI. macroparenthesesICMIL-UNAM 12000MeUNAMYUC76Mexico-YucPP093693––Florida Museum-ICMIL-UNAM, unpublI. macroparenthesesUF20352BCUR-0532Curaçao-CMRS24EPP093694Florida Museum, unpubl.I. badionotusUF4703USA-Florida-GM, Off St. Petersburg(KX874354)Miller et al. (2017)I. maculatus phoenius * (I. badionotus)MHE133(JN207564)(JN207495)Honey-Escandon et al. (2012)I. maculatus phoenius * (Isostichopus sp.)Isolate IF-2009(FJ971400)(FJ794474)Wen et al. (2011)I. maculatus phoenius * (Isostichopus sp.)Isolate 1(KX384008)(KX383967)Vergara et al. (2018)I. maculatus phoenius * (Isostichopus sp.)Isolate A5(KX384001)(KX383978)Vergara et al. (2018)I. maculatus phoenius * (Isostichopus sp.)Isolate R3(KX383999)(KX383985)Vergara et al. (2018)I. maculatus phoenius * (Isostichopus sp.)Isolate SPA2(KX383995)(KX383988)Vergara et al. (2018)I. badionotusFAO 044(EU848276)(EU822435)Uticke et al. (2010)I. badionotusIsolate 1H(KX384010)(KX383968)Vergara et al. (2018)I. badionotusIsolate 3H(KX384016)(KX383972)Vergara et al. (2018)I. badionotusIsolate Br2(KX384011)(KX393982)Vergara et al. (2018)I. fuscusIsolate If1(AF486424)Uticke et al. (2010)I. fuscusIsolate If15(AF486425)Uticke et al. (2010)Astichopus multifidusAmuBT18Panama-BTMK477880This studyA. multifidusFAO 042(EU848293)Uticke et al. (2010)A. multifidus * (I. macroparentheses)AMNH A113281(AY338415)Kerr et al. (2005)Stichopus horrensy11(NC014454)(NC014454)(NC014454)Fan et al. (2011)Apostichopus japonicusclone 1(NC012616)(NC012616)Sun et al. (2010)A. japonicusclone 1(AY852278)Sun et al. (2010)