five

Should we remediate small molecule structures? If so, who should do it?

收藏
DataCite Commons2020-08-28 更新2024-07-27 收录
下载链接:
https://tandf.figshare.com/articles/Should_we_remediate_small_molecule_structures_If_so_who_should_do_it_/7067675/1
下载链接
链接失效反馈
官方服务:
资源简介:
Problems can arise in crystallographic databases with errors and omissions in the representation of data that impede searches, and with errors in the actual data. While the Cambridge Crystallographic Data Centre with its Improvement Projects has solved many of the first category of problems, errors in atomic coordinates and other crystallographic data are surprisingly common. Although modern software warns of many types of error, such errors appear even in recently deposited Crystallographic Information Files. Richard Marsh found many examples of missed symmetry in assignment of the space group; such errors are now waning. Hydrogen atoms are commonly placed in calculated positions. Particularly for OH and NH groups involved in hydrogen bonds, occupancy factors may need to be reduced to 0.5 or the hydrogen atom positions may require amendment. Examples of acids and imidazole derivatives are provided, showing that sometimes only consideration of bond distances and angles at the heteroatom can distinguish between OH or NH and unprotonated O or N. Significant work by other researchers correcting mis-positioned hydrogen atoms in dihydrogen phosphates and water aggregates as well as mis-identified elements is also summarized. This review concludes with some suggestions for more comprehensive detection and correction of errors in deposited data.
提供机构:
Taylor & Francis
创建时间:
2018-09-10
5,000+
优质数据集
54 个
任务类型
进入经典数据集
二维码
社区交流群

面向社区/商业的数据集话题

二维码
科研交流群

面向高校/科研机构的开源数据集话题

数据驱动未来

携手共赢发展

商业合作