Gene annotation, protein models, coding sequences list

Gene annotation of Nettle (Urtica dioica ssp. dioica) genomes using BRAKER3. The .tar.gz file contains the following 6 files each:Figshare_uploads_Gene.tar.gz: Gene annotation of haplotype 1 in .gtf (braker3.Nettle_female_H1_v2_RNA_ProtsViridiplantaeOrthoDB.gtf)Gene annotation of haplotype 2 in .gtf (braker3.Nettle_female_H2_v2_RNA_ProtsViridiplantaeOrthoDB.gtf)List of protein sequences annotated in haplotype 1 in amino acid .fasta format (braker3.Nettle_female_H1_v2_RNA_ProtsViridiplantaeOrthoDB.faa)List of protein sequences annotated in haplotype 2 in amino acid .fasta format (braker3.Nettle_female_H2_v2_RNA_ProtsViridiplantaeOrthoDB.faa)List of coding sequences (CDS) annotated in haplotype 1 in nucleotide .fasta format (braker3.Nettle_female_H1_v2_RNA_ProtsViridiplantaeOrthoDB.codingseq)List of protein sequences (CDS) annotated in haplotype 2 in nucleotide .fasta format (braker3.Nettle_female_H2_v2_RNA_ProtsViridiplantaeOrthoDB.codingseq)Figshare_uploads_Gene_male.tar: Gene annotation of haplotype 1 in .gtf (braker3.Nettle_male_H1_v2_RNA_ProtsViridiplantaeOrthoDB.gtf)Gene annotation of haplotype 2 in .gtf (braker3.Nettle_male_H2_v2_RNA_ProtsViridiplantaeOrthoDB.gtf)List of protein sequences annotated in haplotype 1 in amino acid .fasta format (braker3.Nettle_male_H1_v2_RNA_ProtsViridiplantaeOrthoDB.faa)List of protein sequences annotated in haplotype 2 in amino acid .fasta format (braker3.Nettle_male_H2_v2_RNA_ProtsViridiplantaeOrthoDB.faa)List of coding sequences (CDS) annotated in haplotype 1 in nucleotide .fasta format (braker3.Nettle_male_H1_v2_RNA_ProtsViridiplantaeOrthoDB.codingseq)List of protein sequences (CDS) annotated in haplotype 2 in nucleotide .fasta format (braker3.Nettle_male_H2_v2_RNA_ProtsViridiplantaeOrthoDB.codingseq)Note that headers of the protein sequences match the "transcript" IDs on the .gtf file, meaning the protein sequences include all the splicing variants predicted.