List of sample sets used for the benchmark.

Here we report a list of all sample sets used to evaluate performances of both PHENSIM and BioNSi. For each sample set, we report the GEO series from which the samples were taken together with the title and the technology used to assess expression. Furthermore, we report the altered gene, its type of alteration (Overexpression or Underexpression), and the GEO sample identifiers for both cases and controls. We also report if the gene was present and not isolated in the KEGG meta-pathway. (XLSX)