SNP data for Neurospora sitophila (vcf format)
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https://figshare.com/articles/dataset/SNP_data_for_Neurospora_sitophila_vcf_format_/12820712
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资源简介:
SNP data in VCF format, based on paired-end Illumina hiseq reads. The dataset contains 56 strains of Neurospora sitophila, 4 N. tetrasperma and 2 N. hispaniola.
Most strains were generated as part of Svedberg et al. (2020), but the N. tetrasperma strains and one N. sitophila (1135) andone N. hispaniola strain was take from Corcoran et al. (2017).
Full strain list:10393, 10403, 10404, 10408, 1135, 1765, 2234, 2235, 2370, 2492, 2493, 2684, 3215, 3216, 4732, 4736, 4737, 4738, 4739, 4741, 4746, 4752, 4753, 4785, 4794, 5933, 5935, 5940, 5941, 6213, 6220, 6223, 6227, 6232, 6235, 6284, 6646, 6673, 6863, 6886, 7844, 8173, 8770, 8817, CJ06, CJ30, CJ71, CJ81, W1249, W1294, W1297, W1306, W1312, W1321, W1325, W1330, W1413, W1417, W1426, W1432, W1434, W1446
N. tetrasperma strains: CJ06, CJ30, CJ71, CJ81.
N hispaniola: 8817, 10403.All strain names consisting of just a number (ie 1234) refer to the strain ID in the Fungal Genetics Stock Center (FGSC).
More information can be found in Svedberg et al. (https://www.biorxiv.org/content/10.1101/2020.01.29.923946v1)Corcoran et al.: genome.cshlp.org/content/26/4/486
创建时间:
2021-03-05



