Table S9 (expanded): list including all fine mapped cardiac GWAS loci
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This R object includes a list of all 210 fine mapped loci. Each element includes: · gene or transcript ID; · phenotype (rna or isoform); · eQTL type (0 = primary, 1-5 = conditional); · trait ID from the pan UK BioBank; · locus coordinates; · a data frame with the GWAS summary statistics for the locus, including: position; variant ID, effect size (meta-analysis); standard error and p-value; · a data frame with the eQTL summary statistics, as in Table S2: chromosome, position, reference, alternative, RS ID, variant ID, allele frequency, effect size (beta) and its standard error, p-value, gene or transcript ID, Bonferroni-adjusted p-value (across all tests for the same gene/transcript) and type (0 = primary, 1-5 = conditional); · a data frame with the fine mapped variants, sorted by PPA: variant ID; PPA (calculated using the coloc.abf function), position, cumulative PPA, and credible set (TRUE if the variant is included in the 99% credible set) · a vector with the variant IDs of all the variants included in the 99% credible set; · the credible set size
提供机构:
D'Antonio, Matteo
创建时间:
2021-08-31



