Additional file 3 of Haplotype-resolved genomes of two buckwheat crops provide insights into their contrasted rutin concentrations and reproductive systems

Additional file 3: Table S1. Sequencing reads used for assembly of F. esculentum genome. Table S2. Sequencing reads used for assembly of F. tataricum genome. Tables S3. BUSCO analysis of genome assembly completeness of F. esculentum and F. tataricum. Table S4. Classification of repetitive elements in F. esculentum and F. tataricum genomes. Table S5. Summary of RNA sequencing data. Table S6. Gene model characteristics of F. esculentum genome. Tables S7. BUSCO evaluation of predicted gene models for two Fagopyrum genomes. Table S8. Gene model characteristics of F. tataricum genome. Table S9. Functional annotation of predicted gene for F. esculentum genome. Table S10. Functional annotation of predicted gene for F. tataricum genome. Table S11. Gene data sets used for comparative genomic analysis. Table S12. Syntenic gene pairs within F. esculentum genome. Table S13. Syntenic gene pairs within F. tataricum genome. Table S14. Summary of gene family clustering. Table S15. GO enrichment analysis of lineage-specific genes in the Fagopyrum. Table S16. Summary of gene families expansion/contraction in species. Table S17. GO enrichment analysis of the expanded gene families in F. tataricum. Table S18. GO enrichment analysis of the expanded gene families in F. esculentum. Table S19. Summary of FeUGT2 promoter cis-acting elements prediction. Table S20. Summary of FtUGT2 promoter cis-acting elements prediction. Table S21. The list of S-RNase in different species. Table S22. The genetic differences within the haploid genome.