Source code 2: Test datasets for OPT reconstruction and registration (part 6)

These RAR archive files contain the following: (1) acquisition data from our OPT platform of a 2 dpf fezf2 mutant embryo stained with an in situ probe for ascl1a (folder 'data\OPT', extension '.mat'). This file serves as a test dataset for our OPT reconstruction source code. (2) Unstained reference fish (URFs; folder 'data\Registration\ referenceFish') and OPT reconstructions from 8 wild-type embryos (folder 'data\Registration\TestData_th_2dpf\wt') and 8 fezf2 mutant embryos (folder 'data\Registration\TestData_th_2dpf\mt') stained with an in situ probe for tyrosine hydroxylase (th). URFs for 2 dpf and 3 dpf are provided. All th-stained embryos are 2 dpf. These images serve as a test dataset for our registration source code. Source code for both OPT reconstruction and registration is available at https://github.com/aallalou/OPT-InSitu-Toolbox (Allalou, 2017). Download all RAR archive files (parts 1 through 7) prior to extraction.本RAR压缩归档文件包含以下内容： (1) 基于光学投影层析成像（Optical Projection Tomography，OPT）平台获取的采集数据：一份经ascl1a原位探针染色的受精后2天（dpf）fezf2突变体胚胎的扫描数据，存储于`dataOPT`文件夹，文件扩展名为`.mat`。该数据集可作为我们OPT重建源代码的测试数据集。 (2) 未染色对照鱼（Unstained Reference Fish，URFs），存储于`dataRegistration eferenceFish`文件夹；以及8份野生型胚胎、8份fezf2突变体胚胎的OPT重建图像：其中野生型胚胎样本存储于`dataRegistrationTestData_th_2dpfwt`文件夹，突变体胚胎样本存储于`dataRegistrationTestData_th_2dpfmt`文件夹，所有上述胚胎均经酪氨酸羟化酶（tyrosine hydroxylase，th）原位探针染色。本数据集同时提供2 dpf及3 dpf阶段的未染色对照鱼样本，且所有经th染色的胚胎均为2 dpf阶段。该图像数据集可作为我们配准源代码的测试数据集。 OPT重建与配准的源代码可于https://github.com/aallalou/OPT-InSitu-Toolbox 获取（Allalou, 2017）。 解压前请下载全部7个分卷RAR压缩文件（第1至7部分）。