Data for "<b>The evolution of gene functional repertoire in Amorphea: Divergent strategies across Amoebozoa, Fungi, and Metazoa</b>"
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Collection of data used in the study:<b><i>“The evolution of gene functional repertoire in Amorphea: Divergent strategies across Amoebozoa, Fungi, and Metazoa”</i></b>Find related code and input files descriptions in GitHub<b>Supplementary video and file information:</b><b>pipeline_input_files</b><b>.tar</b>. Input files for Github.<b>Supplementary Video 1. BEAP0066, floating form.</b> Video accelerated to x150 normal speed. Total time elapsed = 1.2 h.<b>Supplementary Video 2. BEAP0066, contact of subpseudopodia.</b> Video accelerated to x150 normal speed. Total time elapsed = 1.6 h.<b>Supplementary Video 3. BEAP0066, double-amoeba.</b> Video accelerated to x150 normal speed. Total time elapsed = 5.8 h.<b>Supplementary Video 4. BEAP0066, rings in solid medium.</b> Video accelerated to x300 normal speed. Total time elapsed = 2.9 h.<b>BEAP0066_tsa_transcriptome.fasta. </b><i>Apostamoeba explorator</i> transcriptome.<b>BEAP0079_tsa_transcriptome.fasta.</b> <i>Vannella septentrionalis</i> transcriptome.<b>BEAP0066_proteome.fasta. </b><i>Apostamoeba explorator</i> proteome.<b>BEAP0079_proteome.fasta</b> <i>Vannella septentrionalis</i> proteome.<b>Supplementary File 1. </b>Classification of COG categories in dictyostelids according to their relative similarity to Fungi or Amoebozoa.<b>Supplementary File 2. </b>Differentially expressed Pfam clans per taxonomic group.<b>Supplementary File 3. </b>Genomes used for transcriptome decontamination.<b>Supplementary File 4. </b>Sequences used in rRNA figures.<b>Supplementary File 5. </b>18S full alignment with the sequence mask.<b>Supplementary File 6. </b>18S trimmed alignment.<b>Supplementary File 7. </b>Newick tree for Supplementary Figure 1.<b>Supplementary File 8. </b>V4 full alignment with the sequence mask.<b>Supplementary File 9. </b>V4 trimmed alignment.<b>Supplementary File 10. </b>Newick tree for Supplementary Figure 2.<b>Supplementary File 11. </b>Species used in the project with source and name abbreviation.<b>Supplementary File 12. </b>Newick tree for Figure 1.<b>Supplementary File 13. </b>Scanning electron microscopy additional images.<b>Supplementary File 14. </b>Transmission electron microscopy additional images.
