Nuphar_ABC_Arrigo2016
收藏DataONE2016-07-20 更新2024-06-26 收录
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资源简介：
This folder contains:
- SSR/ = empirical SSR dataset
- data/ = ini files, hard coded
- Qoutputs/ = quantinemo outputs
- Qparams/ = quantinemo parameter files
- Qstats/ = final summary stats
- scripts/ = all needed scripts, look at README.jpg to get an idea how how the pipeline works
- quantinemo = QuantiNemo V 1.6.0 (unreleased), can be downloaded at
http://www.unil.ch/popgen/softwares/quantinemo/blaser_et_al_evolution.zip
otherwise, contact Samuel Neuenschwander for getting a copy.
Note that the pipeline must be started from scripts/ using the following command:
perl ABC_loader.pl ncores nmax
-ncore = number of parallel instances of quantiNemo you want to run
-nmax = launch jobs until reaching nmax CPU load
Dependencies:
## Linux OS, Ubuntu 10.04
## Perl v5.10.1
threads;
threads::shared;
File::Basename;
List::Util qw(shuffle);
## R >= 3.0.0
e1071
## QuantiNemo: V 1.6.0
创建时间：
2016-07-20
