Pastor WGS vs IWGSC RefSeq v1.0 Genome Assembly

WGS reads of Pastor (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q

本数据集包含来自Pastor（http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x）的全基因组测序（Whole Genome Sequencing, WGS）读段，使用Minimap2将其比对至国际小麦基因组测序联盟（International Wheat Genome Sequencing Consortium, IWGSC）的普通小麦（Triticum aestivum）中国春参考基因组组装版本v1.0。本数据集附带BAM（Binary Alignment Map）格式比对文件（.bam）及其索引文件（.bam.bai），以及用于展示读段比对覆盖度的bigWig格式汇总文件（.bam.bw）。基于上述BAM格式比对文件调用单核苷酸多态性（Single Nucleotide Polymorphism, SNP）变异，生成VCF（Variant Call Format）格式变异文件（.bam.vcf.gz）及其索引文件（.bam.vcf.gz.tbi），同时附带用于展示SNP密度（每10千碱基对的SNP数量）的bigWig格式汇总文件（.bam.vcf.w10000_s10000.bw）。上述VCF格式变异文件包含以下过滤值及其对应含义：PASS=高质量（Q≥30）的纯合变异；Het=高质量（Q≥30）的杂合变异；LowQualHom=低质量（Q