Vesicle and reaction-diffusion hybrid modeling with STEPS

This repository, a snapshot from Github public repository https://github.com/CNS-OIST/STEPS_Validation/vesicles, contains all data and modeling scripts to reproduce the data presented in: Iain Hepburn, Jules Lallouette, Weiliang Chen, Andrew R. Gallimore, Sarah Y. Nagasawa-Soeda, Erik De Schutter (2024) Vesicle and reaction-diffusion hybrid modeling with STEPS. Communications Biology 7(1):573. doi:10.1038/s42003-024-06276-5 The repository contains README files with instruction for how to run the model scripts and reproduce the figures. The work presented is based on the simulator STochastic Engine for Pathway Simulation (STEPS) version 5.0.1, which is publicly availble from: https://github.com/CNS-OIST/STEPS/releases/tag/5.0.1