Additional file 2 of Selective sweeps identification in distinct groups of cultivated rye (Secale cereale L.) germplasm provides potential candidate genes for crop improvement

Additional file 2: Table S1. Information on rye accessions used in the study, including genebank accession number, name, source, taxon, improvement status, country of origin, geographic region, group memberships based on STRUCTURE anaysis and NJ clustering, and sweep detection set membership. Table S2. List of 12486 HQ DArTseq markers used in this study, including their sequences and position in the Lo7 reference genome. Table S3. Chromosomal distribution of SNPs by germplasm group. Table S4. Pairwise population FST values for accessions groups based on NJ clustering. Table S5. Values of genetic diversity indices for the collection of 478 rye accessions and each established germplasm group. Table S6. Information on common outliers and sweeps detected by all three methods (SweeD, OmegaPlus and RAiSD) in groups of cultivated rye accessions. Table S7. List of putative candidate genes targeted by selection in cultivated rye. Table S8. Enriched GO terms for putative candidate genes from the selective sweep regions. Table S9. Literature based list of known cereal domestication/improvement genes and locations of their putative homologues in the Lo7 genome.