HaploMaker paper Files
收藏Research Data Australia2024-12-14 收录
下载链接：
https://researchdata.edu.au/haplomaker-paper-files/1884021
下载链接
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资源简介：
All vcf files required to run the commands:commonmerge.vcfNA12878_sorted.vcfNA12878_sorted_noheader.vcfNA12877_noheader.vcfHaploMaker Outputs:NA12877_10X_haplomaker.hapNA12877_25X_haplomaker.hapNA12878_hifi_haplomaker.hapNA12878_haplomaker_pacbio.hapHapCompass Outputs:NA12877_10X_hapcompass_q5.txtNA12877_25X_hapcompass_q3.txtWhatsHap outputs:NA12877_10X_whatshap_phased_q5.vcfNA12877_25X_whatshap_phased.vcfNA12878_hifi_whatshap.vcfNA12878_whatshap_pacbio.vcfHapcut2 outputs:NA12877_10X_hapcut2_q5.hapNA12877_25X_hapcut2.hapNA12878_hifi_hapcut2_pruned.hapNA12878_hapcut2_pruned_pacbio.hap
运行命令所需的全部变异调用格式（Variant Call Format，VCF）文件包括：commonmerge.vcf、NA12878_sorted.vcf、NA12878_sorted_noheader.vcf、NA12877_noheader.vcf。
各工具输出文件如下：
HaploMaker 输出文件：NA12877_10X_haplomaker.hap、NA12877_25X_haplomaker.hap、NA12878_hifi_haplomaker.hap、NA12878_haplomaker_pacbio.hap
HapCompass 输出文件：NA12877_10X_hapcompass_q5.txt、NA12877_25X_hapcompass_q3.txt
WhatsHap 输出文件：NA12877_10X_whatshap_phased_q5.vcf、NA12877_25X_whatshap_phased.vcf、NA12878_hifi_whatshap.vcf、NA12878_whatshap_pacbio.vcf
Hapcut2 输出文件：NA12877_10X_hapcut2_q5.hap、NA12877_25X_hapcut2.hap、NA12878_hifi_hapcut2_pruned.hap、NA12878_hapcut2_pruned_pacbio.hap
提供机构：
The University of Adelaide
