Bacillus pseudomycoides CHAES I 2_2 EggNOG genome annotation

Protein-coding sequences of the strain CHAES_2_2, predicted using Prokka, were functionally annotated using eggNOG-mapper v2. The input consisted of amino acid sequences in FASTA format. Orthology inference and functional annotation were performed using DIAMOND v2.0.11 as the primary sequence search engine.The analysis was executed in protein mode, using 12 CPU threads. Gene Ontology (GO) terms were assigned using all available evidence codes. Pfam domain annotations were refined using realignment against HMM profiles.The eggNOG-mapper pipeline provided orthology-based functional annotation, including assignment of orthologous groups, functional categories, and multiple functional databases. The following annotations were retrieved for each protein where available:· Enzyme Commission (EC) numbers· KEGG Orthology (KO) identifiers· KEGG Pathways· KEGG Modules· KEGG Reactions· KEGG Reaction Classes (rclass)· KEGG BRITE hierarchies· KEGG Transporter Classification (TC)· CAZy (Carbohydrate-Active enZymes) families· BiGG metabolic reactions· Pfam protein domains· Orthologous group assignmentsAll output files were generated using eggNOG-mapper default parameters.