A Systems Survey of Progressive Host-Cell Reorganization during Rotavirus Infection

Single cell data extracted from a genome-wide siRNA screen of HCT116 colon cancer cells. Extracted features quantify nuclear and rotavirus infection phenotypes based on DAPI and Viral Protein 6 markers. These include nuclear and cell shape, texture values, intensity values and infection values.
Example script for retrieving measurements from this dataset in MatLab
% To get the list of available data namesstrFilePath = 'HDF_SingleCell.hdf';
hinfo= hdf5info(strFilePath)hinfo.GroupHierarchy.Groups.Name
% A dataset is available for each well. Plate number character 3-4,% plate replicate character 7, followed by the row and column numberwellName = 'T810r2iR11C16';
% Read specific dataseth5read(strFilePath,strcat('/', wellName, '/matCompleteData'))
% Get feature names: 168 features are available for each single cellallfeatures = h5read(stFilePath,'/ProbModelData/strFinalFieldName');