Simultaneous Pathway Activity Inference and Global Gene Expression Analysis Using RNA Sequencing
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https://data.mendeley.com/datasets/grkvc54ggm
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资源简介：
Data accompanied with the paper "Simultaneous Pathway Activity Inference and Global Gene Expression Analysis Using RNA Sequencing"
The data is generated using TF-seq experimental technique that measures binding activity of more than 40 different transcription factors in parallel. It covers three experiments:
* Stimulation of wild-type and Myd88 knockout BMDMs with 12 different pathogen associated molecular patterns (PAMPs)
* Small molecule screen on BMDMs
* Dose-response experiment using Halofuginone on BMDMs, with and without LPS stimulation
The data consists of :
* fastq files
* associated well and reporter tags
* counts of all reads, RNA and DNA UMIs
* script we used to convert fastq files to count matrices
创建时间：
2016-05-05
