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PacBio HiFi and ONT sequencing for draft assembly of Solanum demissum (WKS30238)

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NIAID Data Ecosystem2026-05-10 收录
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https://www.ncbi.nlm.nih.gov/sra/ERP182873
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资源简介:
This study reports sequencing data generated to support the draft genome assembly of Solanum demissum (Gross Lusewitz Potato Collections, IPK; accession WKS30238). High-quality long-read sequencing was performed using PacBio HiFi, complemented by ultra-long Oxford Nanopore Technology (ONT) reads (>50 kb) data to improve contiguity and scaffolding. The assembly was produced using hifiasm v0.19.6-r595 with default parameters and a phasing mode of --n-hap 6, resulting in a collapsed genome size of approximately 2.2 Gb and 5,108 unitigs. This genome resource was generated as part of a study examining the transmission and distribution of introgressed haplotypes from wild Solanum relatives into European potato germplasm.
创建时间:
2026-02-19
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