batch_7.catalog.tags.tsv

Stacks1.04 denovo_map.pl pipeline was used to construct a catalog of loci from ddRAD-seq reads of S. carnatus and S. chrysomelas samples. . We specified a minimum depth of coverage (m) of two, a maximum number of mismatches between stacks (alleles) within an individual (M) of two, and a maximum number of mismatches between individuals (n) of one to build the catalog. M and n allow for assembly of polymorphic loci within individuals and fixed differences among individuals at a locus, respectively. See the Stacks manual for headers.