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Transcriptome analysis in shNull and shSETD8 medulloblastoma cells

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NIAID Data Ecosystem2026-03-11 收录
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE121247
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The goal of this study was to determine the effect on gene transcription profiles in medulloblastoma cells that were depeleted of the epigenomic modifier SETD8 vs control. RNA-seq was performed using the illumina HiSEQ 4000 HT for 1x50 sequencing. High quality base calls at 95% ≥ Q30 were obtained with 53M-69M single reads. Statistical analysis of count data was performed with DESeq2 R package.
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2019-05-17
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