Exploring the maize transcriptional regulatory landscape through large-scale profiling of transcription factor binding sites

Dataset Description - Version 2 ChIPSeeker Annotation Files for 513 Transcription Factors This supplementary dataset contains: 513TFs_ChIPSeeker_annotation_raw.zip - ChIPSeeker annotation results for 513 TF peaks (before regulatory region filtering) 513TFs_ChIPSeeker_annotation_regulatory_filtered.zip - ChIPSeeker annotation results for 513 TF peaks (after regulatory region filtering) Note: ChIPSeeker annotations use promoter regions defined as ≤5kb from transcription start sites (TSS) Related datasets: Main dataset (network files, motif data, functional analysis): https://doi.org/10.5281/zenodo.16027369 Resources: Analysis code: https://github.com/Huo-qiang/accuracy-enhanced-maize-gene-regulatory-network-mGRN IGV browser: https://dap-seq.maize-endosperm.cn/ Raw data: https://ngdc.cncb.ac.cn/gsa/browse/CRA022036 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201701 Citation:If you use the data or code, please cite: Huo Q., Zhang Z., Zhang K., Wang Q., Zhang W., Ye X., Lyu Q., Galbraith D.W., Ma Z., and Song R. (2025). Exploring the maize transcriptional regulatory landscape through large-scale profiling of transcription factor binding sites. Mol. Plant. 18, 1777–1798. doi: https://doi.org/10.1016/j.molp.2025.08.009