Data from: Inconsistent reproductive isolation revealed by interactions between Catostomus fish species
收藏资源简介:
Input file for entropy analysisGenotype likelihoods (simplified from VCF) at 11,221 SNPs for 2785 individual Catostomus fish. This file was used for analyses of hybridization.entropy_common0.7.mpglartificial reference genomeThis reference was made by completing a denovo assembly of a subset of the data using smng (see manuscript text) and all reads were assembled to this reference for variant calling.split_sucker_ref_mm90.fastaFull VCF fileAll variant sites initially identified for analysis of hybridization. This VCF was produced using samtools and bcftools, and contains information for 2785 Catostomus individuals.variants_0.7.vcf
熵分析输入文件:涵盖2785尾吸口鱼属(Catostomus)个体的11221个单核苷酸多态性(Single Nucleotide Polymorphisms,简称SNP)位点的基因型似然值(由VCF格式(Variant Call Format)文件简化而来),该文件曾应用于杂交分析研究,文件名为entropy_common0.7.mpgl。 人工参考基因组:该参考基因组通过使用smng工具对数据集子集进行从头组装(详见手稿正文)构建而成,所有测序读段均比对至该参考基因组以开展变异检测,参考基因组文件名为split_sucker_ref_mm90.fasta。 完整VCF格式文件:所有最初用于杂交分析的变异位点对应的VCF文件,该文件由samtools与bcftools工具生成,包含2785尾吸口鱼属个体的变异信息,文件名为variants_0.7.vcf。



