Variant Site Strain Typer (VaST): Efficient strain typing using a minimal number of variant genomic sites

This repository contains the matrices used to build the minimum spanning sets for Yersenia pestis, Bacillus anthracis, Escherichia coli, Burkholderia pseudomallei, and Francisella tularensis. The target sites identified for resolving each strain complex is also provided in the haplotype files. The loci used for the truncated, experimentally-validated panel are also listed.

本仓库包含了构建耶尔森氏菌（Yersenia pestis）、炭疽芽孢杆菌（Bacillus anthracis）、大肠杆菌（Escherichia coli）、鲍曼不动杆菌（Burkholderia pseudomallei）和土拉伦斯菌（Francisella tularensis）的最小生成集所使用的矩阵。用于解决每个菌株复合体的目标位点亦在单倍型文件中提供。此外，用于截断并经实验验证的位点列表亦一并列出。