MorpheusML model repository

The public MorpheusML model repository collects, curates, documents and tests computational models for multi-scale and multicellular biological systems. Model must be encoded in the model description language MorpheusML. Subsections of the repository distinguish published models from contributed non-published and example models. New models are simulated in Morpheus or Artistoo independently from the authors and results are compared to published results. Successful reproduction is documented on the model's webpage. Models in this repository are included into the CI and test pipelines for each release of the model simulator Morpheus to check and guarantee reproducibility of results across future simulator updates. The model’s webpage provides a History-link to all past model versions and edits that are automatically tracked via Git. Each model is registered with a unique and persistent ID of the format M..... The model description page (incl. the biological context and key results of that model), the model’s XML file, the associated paper, and all further files (often simulation result videos) connected with that model can be retrieved via a persistent URL of the format https://identifiers.org/morpheus/M..... - for technical details on the citable ModelID please see https://registry.identifiers.org/registry/morpheus - for the model definition standard MorpheusML please see https://doi.org/10.25504/FAIRsharing.78b6a6 - for the model simulator Morpheus please see https://morpheus.gitlab.io - for the model simulator Artistoo please see https://artistoo.net/converter.html

公共的 MorpheusML 模型存储库汇集、整理、编纂并测试多尺度和多细胞生物系统的计算模型。模型必须使用模型描述语言 MorpheusML 进行编码。存储库的子部分区分了已发布的模型、非发布的贡献模型以及示例模型。新模型在 Morpheus 或 Artistoo 中独立于作者进行模拟，并将结果与已发布的结果进行比较。成功复现的结果将在模型的网页上进行记录。该存储库中的模型被纳入 Morpheus 模型模拟器的每个版本发布时的持续集成和测试流程中，以检查并保证未来模拟器更新后结果的可复现性。模型的网页提供了一个历史链接，可访问通过 Git 自动跟踪的所有过去模型版本和编辑。每个模型都注册了一个唯一的持久 ID，格式为 M..... 模型描述页面（包括该模型的生物背景和关键结果）、模型的 XML 文件、相关论文以及所有与该模型相关的文件（通常是模拟结果视频）都可以通过格式为 https://identifiers.org/morpheus/M..... 的持久 URL 获取。有关可引用的 ModelID 的技术细节，请参阅 https://registry.identifiers.org/registry/morpheus。有关 MorpheusML 模型定义标准，请参阅 https://doi.org/10.25504/FAIRsharing.78b6a6。有关 Morpheus 模型模拟器，请参阅 https://morpheus.gitlab.io。有关 Artistoo 模型模拟器，请参阅 https://artistoo.net/converter.html。