Additional file 2 of Statistical learning quantifies transposable element-mediated cis-regulation

Additional file 2: Table S2. Enriched TE subfamilies found in the proximity of differentially expressed (DE) genes for LTR5-Hs/SVA CRISPRi g#1 using lenient DE calling (Fisher’s exact test, p-val [MYLT]0.05). The sign of the log fold change (up/downregulation) is reported in the “direction” column. DE genes were called without adjusting for multiple testing. p-values for the enrichment test were computed according to the hypergeometric distribution, and adjusted with the Benjamini-Hochberg procedure.