遇见数据集

GDC TCGA cancer datasets for GenMorw

收藏
科学数据银行2024-09-25 更新2026-04-23 收录
官方服务:

资源简介:

We downloaded and organized 33 cancer data from GDC TCGA via the UCSC Xena platform (https://xena.ucsc.edu/) for input into our GenMorw algorithm. Users can decompress the files and place them in the 'Cancer Data' folder within the GitHub repository to obtain prioritization of driver gene predictions.It comprises 33 directories (GDC_CANCER), along with a methylation annotation file (illuminaMethyl450_hg38_GDC) and a gene coding annotation file (gencode.v22.annotation.gene.probeMap).Each directory includes a download information file (informations.tsv), cancer patient phenotypes (TCGA-CANCER.GDC_phenotype.tsv.gz), copy number variation (TCGA-CANCER.gistic.tsv.gz), gene expression (TCGA-CANCER.htseq_fpkm.tsv.gz), methylation (TCGA-CANCER.methylation450.tsv.gz), miRNA (TCGA-CANCER.mirna.tsv.gz), gene mutation data (TCGA-CANCER.mutect2_snv.tsv.gz), and patient survival data (TCGA-CANCER.survival.tsv).

提供机构:
Shandong University
创建时间:
2024-06-01
二维码
社区交流群
二维码
科研交流群
商业服务