High-resolution nucleosome positioning from ATAC-seq chromatin accessibility data

Alliance of Genome Resources2026-08-01 收录

核小体定位

ATAC-seq分析

数据链接：

https://www.yeastgenome.org/dataset/GSE66386 数据链接链接失效反馈

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资源简介：

We describe the NucleoATAC algorithm for high-resolution nucleosome positioning and occupancy determination using ATAC-seq.

High-Resolution Nucleosome Mapping Reveals Transcription-Dependent Promoter Packaging

染色质结构

核小体定位

Genome-wide mapping of nucleosomes has revealed a great deal about the relationships between chromatin structure and control of gene expression, and has led to mechanistic hypotheses regarding the rul

NIAID Data Ecosystem70

Disruption of the TFAP2A regulatory domain causes Branchio-Oculo-Facial Syndrome (BOFS) and illuminates pathomechanisms for other human neurocristopathies [ATAC-seq]

神经病变机制

ATAC-seq分析

BOFS is a rare congenital syndrome that arises due to defects during neural crest (NC) development and is thus considered as a human neurocristopathy. All reported BOFS cases are caused by heterozygou

NIAID Data Ecosystem30

Chromatin accessibility profiling by ATAC-seq. Chromatin accessibility profiling by ATAC-seq

染色质可及性分析

ATAC-seq分析

An updated protocol for ATAC-seq, including wet-lab library preparation and guidelines about sequencing and data analysis. Overall design: ATAC-seq was performed on the cell lines at a variety of diff

NIAID Data Ecosystem20

Identification of the PRC1-interacting protein, L3mbtl3 as a novel gatekeeper of neocortical neurogenesis and proneural gene function [ATAC-seq]

皮层神经发生

ATAC-seq分析

The neocortex is comprised of six neuronal layers that are derived in an inside-out sequence. Neurog2, a proneural gene encoding a basic-helix-loop-helix transcription factor, is required and sufficie

NIAID Data Ecosystem40

Additional file 1 of Benchmarking and refining probability-based models for nucleosome-DNA interaction

核小体定位

DNA序列概率建模

Mononucleotide distributions. Table in tab-separated format denoting the mononucleotide probability distributions generated by our Mutation Monte Carlo simulation. (TSV 6 kb)

Figshare2017-03-10 更新20

High-resolution nucleosome positioning from ATAC-seq chromatin accessibility data

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