Top ranked terms in GSEA analysis results for a well-studied prostate cancer dataset.

A well studied prostate cancer dataset [42], [43] was analyzed with GSEA method (Using the newest version (v2.0.1) GSEA tool [24]). GSEA compared the tumor samples to the nonmalignant tissues. Only top ranked functional terms were shown in the table (the chromosomal location-based annotation terms were taken out for simplicity, the full ranked list can be obtained from table S7). 1000 permutations were performed. **: p-value(s) is adjusted to p = 1/number of permutation for p = 0 according to GSEA manual.