The two semi-automatic methods are listed separately as they were not directly compared to the other three methods, and instead were used to identify contributions of registration and segmentation to
The dataset contains two folders. 1. In the "virtual_microscopy" folder, you can find a short screen recording showing how PetroScan works. PetroScan is the built-in toolbox of Virtual Petrography (Vi
Reference brain volume in mm3 (A.csv), overlap values for all pairings (B.csv), surface distance for all pairings (C.csv), success index for all relevant pairings (D.csv). (ZIP)
Comparison of the segmentation quality on simulated 3D benchmark images by Svoboda et al. (HL60 cell line, low SNR, 75% clustering probability) [35]. For quality assessment we used the Rand Index (RI)
