Predicted results for interaction of Yfr1 and six validated targets.

The Rank column shows the rank of the target among all predicted targets from the genome-wide prediction. For sTarPicker, results for each sRNA were sorted based on sTarPicker probability (descending), ΔΔG of binding regions (ascending), and ΔΔG of seed regions (ascending). If an sRNA-target pair returned several binding sites, only the site with the smallest rank was selected. For IntaRNA, results were sorted in ascending order of the energies. Only interactions at the interval of [−39, +19] were considered according to their paper. For sRNATarget, results were sorted in descending order of the sRNATarget scores. The first two som genes were experimentally validated and shown to be bona fide interaction. The remaining interactions were validated to be non-interaction. ‘-’indicates that no interaction was predicted.
aindicates that the rank was obtained when target binding sites were confined at the interval of [−150, +100].
bindicates that the rank was obtained when target binding sites were confined at the interval of [−39, +19].
cindicates that the rank was obtained with default parameter settings.