HMM P-values of the comparisons are shown in bold, with the range of the aligned residues in parentheses below. Yeast protein lengths are indicated by the number of amino acids (aa). SGD identifiers a
A starting alignment was built if other sequences with a known PDB structure were available, by performing a GH19 domain structure-based alignment generated through the mmaker...
Cα’s of each proteins were compared to each other using align function in PyMol. Values shown are RMSD/Cα expressed in angstroms (Å). In parentheses used vs. total number of Cαs after five cycles is s
Three RMSD scores were calculated based on the use of the structures. RMSDMHC is the RMSD for the structure of the MHC molecule alone, RMSDpeptide is the RMSD for the structure of peptide alone, and t
Note: C-alph (RMSD values for pairwise C-Alpha atom superposed by sequence alingments); N-loop (N-terminal loop superposed by 9 residues); β region (the first β-sheet region superposed by 7 residues);
