HDplot_simulation

R code to simulate data for HDplot. This code also runs HDplot internally and produces plots showing expected distributions based on simulation parameters. Simulation parameters include the number of singleton, duplicate, and diverged duplicate loci, the total population size, the sampled population size, average read depth per locus, statistical distribution of reads per locus to sample from and distribution of reads per allele to sample from.用于为HDplot生成模拟数据的R代码。该代码可在内部运行HDplot，并生成基于模拟参数展示预期分布的可视化图表。模拟参数包括单拷贝基因座、重复基因座以及分化型重复基因座的数量，总种群规模、抽样种群规模、每个基因座的平均测序深度（read depth）、用于抽样的每基因座测序读段的统计分布，以及用于抽样的每等位基因（allele）的测序读段分布。