Data supporting: Comprehensive analysis of alternative splicing and transcriptome diversity in apple using long-read sequencing

This Zenodo record contains the data files supporting the manuscript entitled “Comprehensive analysis of alternative splicing and transcriptome diversity in apple using long-read sequencing”. The deposit includes the unified transcript annotation (All.gtf), functional annotation tables, supplementary result tables/source data related to gene expression, transcript expression, alternative splicing, and multilayer candidate prioritization, together with a README file describing file contents and organization. These files support the analyses presented in the main text, figures, and supplementary materials.