Dryad

In the folder “Dryad” you will find 4 subfolders: 1) “Alignment”, which includes the alignment used to reconstruct the molecular phylogeny, and the Partition Finder analyses; 2) “ASR”, which includes one hundred random trees obtained from the posterior distribution of the BEAST analyses, and the files used for the ancestral state reconstruction; 3) “BAMM v2.5”, which includes the raw results from the BAMM analysis and a subfolder "topological uncertainty BAMM v.2.5" which includes 100 random trees and their respective BAMM results; 4) “BiSSE”, which includes the tree, character state table and R script used to run the BiSSE analyses, and a subfolder “topological uncertainty BiSSE” with 100 random trees and their respective R scripts.