Comparing morphological and molecular estimates of species diversity in the freshwater genus Synura (Stramenopiles): a model for understanding diversity of eukaryotic microorganisms.

Multiple alignments of the nuclear ITS rDNA, SSU rDNA and LSU rDNA, plastid rbcL, psaA and LSU rDNA, and mitochondrial coxI loci sequences built either manually in MEGA6 or using MAFFT v6, applying the Q-INS-i strategy. In more variable loci alignments, those positions included in subsequent evolutionary analyses are indicated by mask.本数据集涵盖核转录间隔区核糖体DNA（nuclear ITS rDNA）、小亚基核糖体DNA（SSU rDNA）、大亚基核糖体DNA（LSU rDNA）、质体rbcL基因、psaA基因、质体大亚基核糖体DNA以及线粒体细胞色素c氧化酶亚基I（coxI）基因座的多序列比对结果。上述比对既可通过MEGA6手动构建，也可采用MAFFT v6软件结合Q-INS-i算法（Q-INS-i strategy）完成。对于多态性较高的基因座比对序列，后续进化分析所纳入的比对位点将以屏蔽标记（mask）予以标注。