The initiation and maintenance of CHH methylation and its effects on gene expression are unique in maize (RNA-Seq)

To investigate how differentially methylated regions affect the flanking gene expression, we compared the gene epression between two parents (B73 and Mo17), between parents and wild type F1 (WTF1), and between WTF1 and mop1 mutant F1 (mop1F1). Comparative gene expression analysis of RNA sequencing data for parents, WTF1, and mop1F1.