Additional file 2 of Identification of Key Genes and Pathways for Anaerobic Germination Tolerance in Rice Using Weighted Gene Co-Expression Network Analysis (WGCNA) in Association with Quantitative Trait Locus (QTL) Mapping
The data_raw.csv file is used in the R code to prepare the data and obtain the descriptive statistics. The data_Thesis_Jasp.csv file is the prepared and cleaned data for the analyses in Jasp.
We first identified candidate VMRs, defined as regions of CpG-sites showing the highest variability across all methylation sites.To examine the factors that best explain the variance in methylation in
Density-Flow.dat and Density-Velocity.dat are the raw data in Fig. 3 Syn-flow.dat and Syn-density.dat are the raw data in Fig. 4 Meandist.dat, Steplength.dat and Safedist are the raw data in Fig. 5 Sy
