iPSCORE ATAC-seq: Transcription Factor Binding Predictions

This directory contains three files corresponding to transcription factor binding predictions in ATAC-seq peaks from induced pluripotent stem cells (iPSCs), iPSC-derived cardiovascular progenitor cells (CVPCs), and iPSC-derived pancreatic progenitor cells (PPCs) from the iPSCORE Collection. Transcription factor binding predictions were calculated by TOBIAS (Bentsen et al 2020) using both JASPAR and HOCOMOCO motifs. The files are labeled as [<i>tissue</i>]_<i>JASPAR_</i><i>HOCOMOCO_</i><i>Results_</i>.txt. Each file has the following columns: <b>Tissue</b> the corresponding tissue; <b>Peak_ID</b> the identifier for the ATAC-seq peak; <b>Database</b> the motif database (either JASPAR or HOCOMOCO); <b>TFBS_name</b> the name of the motif; <b>Bound</b> whether the binding site was predicted to be bound by TOBIAS; <b>TFBS_Chromsome</b><i>, </i><b>TFBS_Start</b><i>, </i><b>TFBS_End</b> the genomic coordinates of the binding site in the hg38 build; <b>TFBS_score</b> the score of the binding site calculated by TOBIAS; and <b>TFBS_Strand</b> which strand the binding site is on.