Dataset of a Study of Computational reproducibility of Jupyter notebooks from biomedical publications

This repository contains the dataset for the study of the computational reproducibility of Jupyter notebooks from biomedical publications. We analyzed the reproducibility of Jupyter notebooks from GitHub repositories associated with publications indexed in the biomedical literature repository PubMed Central. The dataset includes the metadata information of the journals, publications, the Github repositories mentioned in the publications and the notebooks present in the Github repositories.