Improving long-read somatic structural variant calling with pangenome and de novo personal genome assembly

These datasets contains four types of supplementary information: Somatic SV calling results by minisv, severus, sniffles2, nanomonsv, savana somatic call mode based on GRCh38 before and after de novo assembly-based filtering from tumor-normal paired long read WGS data in COLO829, HCC1395, HCC1937, HCC1954, NCI1437, NCI2009. Mosaic SV calling results by minisv, severus, sniffles2 mosaic call mode based on GRCh38 before and after de novo assembly-based filtering from tumor-normal mixed long read WGS data in COLO829, HCC1395, HCC1937, HCC1954, NCI1437, NCI2009. Mosaic SV calling results by minisv, severus, sniffles2 mosaic call mode based on GRCh38 for long read WGS data in normal samples HG00099, HG002, HG01192, HG03225, NA18983. De novo assembly fasta files for the normal samples HG00099, HG002, HG01192, HG03225, NA18983, and cancer paired normal samples COLO829BL, HCC1395BL, HCC1937BL, HCC1954BL, NCI1437BL, NCI2009BL, and cancer cell lines long read alignment and extraction of SV signatures based on the paired normal de novo assembly reference