Details of SIPs and SIP genes.

Each sheet in the Excel file details the SIPs and SIP genes for each of the five cell types (Ery = erythrocytes; MacMon = macrophages/monocytes; MK = megakaryocytes; nCD4 = naive CD4 T-cells; Neu = neutrophils). The columns baitID, baitChr, baitStart, baitEnd, and baitName pertain to the promoter bait identifier, gene(s), and bait location (from the Javierre et al.1 pcHi-C data). The column intscore refers to the cumulative interaction score calculated to define SIPs, and the column rank reflects the order of SIP baits from largest score to smallest. Note that a SIP bait may have multiple genes and genes may correspond to multiple SIP baits. The column specific indicates if the SIP gene is only found in this particular cell type, and the column shared indicates if the SIP gene is shared across all five cell types. The next five columns, SIP.Ery, SIP.MacMon, SIP.MK, SIP.nCD4, and SIP.Neu, indicate whether that SIP is also found in the respective cell type. The column ENSEMBL_ID indicates the ENSEMBL ID (GRCh37), if found, for the gene names (baitName) provided in the pcHi-C data. The subsequent columns Ery, MacMon, MK, nCD4, and Neu, report the exponentiated BLUEPRINT gene expression (equivalent to RPKM) data in that cell type, if available.
(XLSX)