Intragenic σ54 ChIP-seq peaks.

a Unique ID; IS = Inside a gene in the Sense orientation, IA = Inside a gene in the Antisense orientation; each peak is assigned a unique number for cross-referencing with other datasetsb Underlined text indicates that a σ54 has been identified in the homologous position in Salmonella Typhimurium [14]c Genome coordinate (U00096.2) of ChIP-seq peak centerd FAT = Fold Above Threshold score (indication of ChIP-seq occupancy)e Associated motif identified using MEME; consensus positions indicated in boldf Genome coordinate (U00096.2) of motif centerg Genomic orientation of associated motifh Overlapping genei Genomic orientation of overlapping genej Closest, appropriately oriented, downstream gene (from the predicted transcription start site, 19 bp downstream of the motif center), excluding the gene that the binding site is withink Distance from the predicted transcription start site (19 bp downstream of the motif center) to the start of the closest, appropriately oriented, downstream gene (bp)l Position Specific Scoring Matrix (PSSM) score (indication of similarity to the consensus site; see Methods)Intragenic σ54 ChIP-seq peaks.