Hallmarks of tumor-experienced T cells are absent in multiple myeloma patients from diagnosis through maintenance therapy

Code and data associated with Shasha et al., "Hallmarks of tumor-experienced T cells are absent in multiple myeloma patients from diagnosis through maintenance therapy". Description of files below: scRNA-seq_code.tar: Python notebooks for analysis of scRNA-seq data, including import and figure generation adata-rev.h5ad: processed CD8 T cell scRNA-seq data from all patients and samples combined ics_tsv_dat.csv: ICS metadata cytof_ics_data.tar: normalized ICS tsv and fcs files from all patients and samples ics_analysis.R: R code for analysis of ICS data cytof_data.tar: CyTOF fcs and txt files (bead normalized and compensated, gated to CD8 T cells)