Additional file 3: of Elucidating the transcriptional program of feline injection-site sarcoma using a cross-species mRNA-sequencing approach

Table S2. Differentially expressed genes in FISS. mRNA-seq gene expression data for 21,890 cat genes in all feline tissue and cell culture samples in this study. Columns as follows: Geneid, Ensembl identifier for the gene; Chrom, identifier of the cat chromosome (MT, mitochondrial chromosome; chromosome identifiers starting with “JH” are unplaced scaffolds) to which the gene has been mapped; Gene Start, leftmost chromosomal coordinate of the gene in the genome assembly; Gene End, rightmost chromosomal coordinate of the gene; Strand, the direction of transcription of the gene (1 denotes positive strand, − 1 denotes negative strand); Symbol, official gene symbol; Description, gene description field; Columns 8–21, absolute RNA-seq tag counts within the indicated gene (row), in the indicated sample (column); log2_fold_change_tissue, log2(sarcoma/skin) value (or “NA” if not statistically significantly different from zero); p_adj_tissue, adjusted p-value for expression level comparison between the sarcoma and skin sample groups; log2_fold_change_cultured_cells, log2(sarcoma cell / fibroblast) value (or NA if not detected as nonzero with statistical significance); p_adj_cultured_cells, adjusted p-value for expression-level comparison between the sarcoma cell line and fibroblast sample groups. (XLSX 4618 kb)