Genomic and occurrence datasets for comparative phylogeography of pygmy perches

Datasets associated with Buckley et al. 2022 "Variation in intraspecific demography drives localised concordance but species-wide discordance in responses to Plio-Pleistocene climatic change." BMC Ecology and Evolution. Both_species_SDM_occurrences.csv = occurrence data used for ensemble species distribution models for Nannoperca australis and Nannoperca obscura. SPP_species_concatenated.phy = concatenated alignment for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) of 19,428 species-wide ddRAD loci. SPP_species_SNPs.str = genotypes for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) at 17,389 'unlinked' (one per RAD locus) SNPs. SPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 9 populations of Nannoperca australis. YPP_species_concatenated.phy = concatenated alignment for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) of 21,051 species-wide ddRAD loci. YPP_species_SNPs.str = genotypes for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) at 15,715 'unlinked' (one per RAD locus) SNPs. YPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 5 populations of Nannoperca obscura.本数据集关联于Buckley及其合作者2022年发表于《BMC Ecology and Evolution》的研究论文《种内人口统计学变异驱动上新世-更新世气候变化响应的局部一致性与全物种尺度不一致性》。 Both_species_SDM_occurrences.csv：用于澳洲狭鲈（Nannoperca australis）与暗纹狭鲈（Nannoperca obscura）集成物种分布模型的物种出现点位数据。 SPP_species_concatenated.phy：包含44尾澳洲狭鲈与作为系统发育外类群的条纹狭鲈（Nannoperca vittata）的19428个全物种ddRAD位点的拼接比对序列文件。 SPP_species_SNPs.str：包含44尾澳洲狭鲈与作为系统发育外类群的条纹狭鲈在17389个“非连锁”（每个RAD位点仅保留1个）单核苷酸多态性位点的基因型数据文件。 SPP_pop_SNPs.zip：包含澳洲狭鲈9个种群的“非连锁”（每个RAD位点仅保留1个）单核苷酸多态性位点的个体种群基因型数据的压缩文件夹。 YPP_species_concatenated.phy：包含33尾暗纹狭鲈与作为系统发育外类群的条纹狭鲈的21051个全物种ddRAD位点的拼接比对序列文件。 YPP_species_SNPs.str：包含33尾暗纹狭鲈与作为系统发育外类群的条纹狭鲈在15715个“非连锁”（每个RAD位点仅保留1个）单核苷酸多态性位点的基因型数据文件。 YPP_pop_SNPs.zip：包含暗纹狭鲈5个种群的“非连锁”（每个RAD位点仅保留1个）单核苷酸多态性位点的个体种群基因型数据的压缩文件夹。