Supplementary Data for "Fast and Accurate Variant Identification Tool for Sequencing-Based Studies"

Benchmark datasets used in this study to evaluate the performance of VCFer and bcftools.Gut_microbiome_benchmark.tar.gz contains gut microbiome reference genomes with in silico SNPs and indels, including SRX5976902 Akkermansia muciniphila (A. muciniphila), SRX5977424 Bacteroides faecis (BaFa), SRX5976649 Bacteroides fragilis (B. fragilis), SRX5976729 Bacteroides ovatus (B. ovatus), SRX6045315 Bacteroides vulgatus (BaVu), SRX6044844 Bacteroides xylanisolvens (BaXy), SRX6044813 Bifidobacterium adolescentis (BiAd), SRX5991169 Escherichia coli (EsCo), and SRX5992782 Parabacteroides distasonis (PaDi).COVID_benchmark.tar.gz contains SARS-Cov-2 (NC_045512.2) reference genomes with in silico SNPs and indels.ExampleDataFig4-6.zip contains sam and vcf output files that support the examples shown in Fig 4-6.